Fungal-Bacterial Mutualism: Species and Strain-Dependent Simultaneous Modulation of Branched-Chain Esters and Indole Derivatives in Fermented Sausages through Metabolite Cross-Feeding.

The precise impact of species and strain diversity on fungal-bacterial interactions and the overall community functioning has remained unclear. First, our study revealed how Debaryomyces hansenii influences diverse bacteria to accumulate key metabolites in a simulated fermented food system. For flavor, D. hansenii promoted the accumulation of branched-chain esters in Staphylococcus xylosus by promoting growth and facilitating the precursor branched-chain acids transformations but hindered the accumulation of Staphylococcus equorum. Furthermore, fungal-bacterial interactions displayed diversity among S. equorum strains. For bioactive compounds, species and strain diversity of lactic acid bacteria (LAB) also influences the production of indole derivatives. Then, we investigated specific metabolic exchanges under reciprocal interaction. Amino acids, rather than vitamins, were identified as the primary drivers of the bacterial growth promotion. Moreover, precursor transformations by D. hansenii played a significant role in branched-chain esters production. Finally, a synthetic community capable of producing high concentrations of branched-chain esters and indole derivatives was successfully constructed. These results provide valuable insights into understanding and designing synthetic communities for fermented sausages.

The impact of indigenous soil yeasts inoculation on bean (Phaseolus vulgaris) growth.

To determine whether the use of soil yeasts as inoculum would intervene in improving bean (Phaseolus vulgaris) growth and its symbiotic parameters, various experiments have been carried out. The effect of inoculation by soil yeasts Meyerozyma guilliermondii GP MT258984, Debaryomyces hansenii DFA MT259039, Rhodotorula mucilaginosa LIA MT259358, Rhodotorula mucilaginosa LC MT252049, along with the strain Saccharomyces cerevisiae in their cell or metabolite forms, was investigated in non-sterile (sand) and agricultural substrates (soil), in association or not with mycorrhizal fungi. The results showed that the yeast could have a beneficial effect on the bean biomass directly without increasing its nodulation and mycorrhization, or indirectly by improving those symbiotic parameters. They also revealed a very important ecological aspect and the possibility of inoculating with indigenous soil yeasts to increase the number of fertilising microorganisms, such as mycorrhizae and rhizobia, without resorting to introducing exogenous strains.

Microbial communities associated with honey bees in Brazil and in the United States.

Honey bee colony losses worldwide call for a more in-depth understanding of the pathogenic and mutualistic components of the honey bee microbiota and their relation with the environment. In this descriptive study, we characterized the yeast and bacterial communities that arise from six substrates associated with honey bees: corbicular pollen, beebread, hive debris, intestinal contents, body surface of nurses and forager bees, comparing two different landscapes, Minas Gerais, Brazil and Maryland, United States. The sampling of five hives in Brazil and four in the USA yielded 217 yeast and 284 bacterial isolates. Whereas the yeast community, accounted for 47 species from 29 genera, was dominated in Brazil by Aureobasidium sp. and Candida orthopsilosis, the major yeast recovered from the USA was Debaryomyces hansenii. The bacterial community was more diverse, encompassing 65 species distributed across 31 genera. Overall, most isolates belonged to Firmicutes, genus Bacillus. Among LAB, species from Lactobacillus were the most prevalent. Cluster analysis evidenced high structuration of the microbial communities, with two distinguished microbial groups between Brazil and the United States. In general, the higher difference among sites and substrates were dependents on the turnover effect (~ 93% of the beta diversity), with a more pronounced effect of nestedness (~ 28%) observed from Brazil microbiota change. The relative abundance of yeasts and bacteria also showed the dissimilarity of the microbial communities between both environments. These results provide a comprehensive view of microorganisms associated with A. mellifera, highlighting the importance of the environment in the establishment of the microbiota associated with honey bees.

Impact of Background Fruit Odors on Attraction of Drosophila suzukii (Diptera: Drosophilidae) to Its Symbiotic Yeast.

Background odors produced by plants in the environment can interfere with the response of insects to a point-releasing attractant, especially when their compositions overlap. In this study, a series of binary choice tests was conducted in a wind tunnel to investigate whether background odors emitted from cherry, blueberry, blackberry, or raspberry fruits would affect the level of Drosophila suzukii (Matsumura) attraction to its symbiotic yeast, Hanseniaspora uvarum (Niehaus) (Saccharomycetales: Saccharomycetaceae). Whether an increase in the intensity of background odors would affect the attractiveness of H. uvarum to D. suzukii was also investigated, either by increasing the number of cherry or raspberry fruit per cup or by increasing the number of fruit cups surrounding the cup baited with the yeast. In wind tunnel assays, background fruit odors interfering with D. suzukii attraction to the yeast varied among fruit types. Raspberry odor inhibited the attractiveness of H. uvarum to the fly the most, followed by blackberry odor, whereas cherry and blueberry odors had no significant impact on the attraction. An increase in the intensity of odors by adding more cherry or raspberry fruit per cup did not increase the impact of fruit odor on the attraction; however, adding more raspberry cups around H. uvarum linearly decreased its attractiveness, suggesting that background host fruit abundance and likely increase in host odor may influence D. suzukii attraction to yeast odor depending on host species.

The ubiquitin ligase parkin mediates resistance to intracellular pathogens.

Ubiquitin-mediated targeting of intracellular bacteria to the autophagy pathway is a key innate defence mechanism against invading microbes, including the important human pathogen Mycobacterium tuberculosis. However, the ubiquitin ligases responsible for catalysing ubiquitin chains that surround intracellular bacteria are poorly understood. The parkin protein is a ubiquitin ligase with a well-established role in mitophagy, and mutations in the parkin gene (PARK2) lead to increased susceptibility to Parkinson's disease. Surprisingly, genetic polymorphisms in the PARK2 regulatory region are also associated with increased susceptibility to intracellular bacterial pathogens in humans, including Mycobacterium leprae and Salmonella enterica serovar Typhi, but the function of parkin in immunity has remained unexplored. Here we show that parkin has a role in ubiquitin-mediated autophagy of M. tuberculosis. Both parkin-deficient mice and flies are sensitive to various intracellular bacterial infections, indicating parkin has a conserved role in metazoan innate defence. Moreover, our work reveals an unexpected functional link between mitophagy and infectious disease.

Copepods associated with polychaete worms in European seas.

Descriptions are given of 18 species of copepods that live in symbiotic association with polychaete worms in European Seas. Three new genera and six new species of the family Clausiidae Giesbrecht, 1895 are described: Boreoclausia rectan. gen. et n. sp. is described from Galathowenia fragilis (Nilson & Holthe, 1985), Boreoclausia holmesi n. gen. et n. sp.is described from Myriochele danielsseni Hansen, 1879, Sheaderia bifida n. gen. et n. sp. from Euclymene oerstedii (Claparède, 1863), Vivgottoia garwoodi n. gen. et n. sp., was found inside the tail fragment of a terebellid host (probably Phisidia aurea Southward, 1956), Rhodinicola tenuis n. sp. from an unknown host, and R. similis n. sp., from Rhodine gracilor (Tauber, 1879). In addition, four other clausiid species, Clausia lubbockii Claparède, 1863, Mesnilia cluthae (T. and A.Scott, 1896), Rhodinicola gibbosus Bresciani, 1964 and R. rugosum (Giesbrecht, 1895), are redescribed in detail on the basis of newly collected material. The previously-unknown hosts of C. lubbockii were found to be species of the spionid polychaete genus Dipolydora Verrill, 1881. Clausia uniseta Bocquet & Stock, 1960 were recognized as a junior subjective synonym of C. lubbockii, and Mesnilia martinensis Canu, 1898 was recognized as a junior subjective synonym of M. cluthae. The sole species of the monotypic family Anomoclausiidae Gotto, 1964, Anomoclausia indrehusae Gotto, 1964, is redescribed based on new material. The host of A. indrehusae, reported here for the first time, is the spionid Pseudopolydora paucibranchiata (Okuda, 1937). Four new species of the family Nereicolidae Claus, 1875 are described, three belonging to the genus Anomopsyllus Sars, 1921: Anomopsyllus bifurcus n. sp. from Notomastus latericeus M. Sars, 1851, A. geminus n. sp. from Ampharete lindstroemi Malmgren, 1867, and A. hamiltonae n. sp., from Mugga wahrbergi Eliasson, 1955. The fourth new species is Vectoriella gabesensis n. sp., both sexes of which are described from the paraonid Aricidea catherinae Laubier, 1967 collected in the Mediterranean Sea off the coast of Tunisia. Another nereicolid, Sigecheres brittae Bresciani, 1964 is redescribed based on new material collected from the type host Sige fusigera Malmgren, 1865. It is recognized as a junior subjective synonym of Nereicola concinna T. Scott, 1902 and the valid name of this taxon becomes Sigecheres concinna (T. Scott, 1902) new combination. A new species of the family Spiophanicolidae Ho, 1984, Spiophanicola atlanticus n. sp., is described based on European material. Previously European material of Spiophanicola Ho, 1984 has been reported as S. spinulosus Ho, 1984, but based on consistent differences between the Californian S. spinulosus and material from Norway and the British Isles, there is sufficient justification to establish a new species for the European material. Finally one new genus and species is described which cannot be placed, with confidence, in any existing family. This new parasite, Notomasticola frondosus n. gen. et n. sp., is based on material from two hosts, a spionid (Pseudopolydora paucibranchiata) and a capitellid (Notomastus latericeus). It is highly derived and may represent a terminal branch within an existing family. The cluster of families using polychaetes as hosts is in need of revision based on a comprehensive phylogenetic analysis.

Associations of yeasts with spotted-wing Drosophila (Drosophila suzukii; Diptera: Drosophilidae) in cherries and raspberries.

A rich history of investigation documents various Drosophila-yeast mutualisms, suggesting that Drosophila suzukii similarly has an association with a specific yeast species or community. To discover candidate yeast species, yeasts were isolated from larval frass, adult midguts, and fruit hosts of D. suzukii. Terminal restriction fragment length polymorphism (TRFLP) technology and decimal dilution plating were used to identify and determine the relative abundance of yeast species present in fruit juice samples that were either infested with D. suzukii or not infested. Yeasts were less abundant in uninfested than infested samples. A total of 126 independent yeast isolates were cultivated from frass, midguts, and fruit hosts of D. suzukii, representing 28 species of yeasts, with Hanseniaspora uvarum predominating. This suggests an association between D. suzukii and H. uvarum that could be utilized for pest management of the highly pestiferous D. suzukii.

[Antistress cross-protection of UV irradiated yeast cells with participation of extracellular peptide factors].

Antistress effect of extracellular peptides on UV irradiated yeast of different phylogenetic groups was studied. Yeast from different ecotopes and taxonomic groups exposed to UV radiation of a lethal intensity showed a protective effect and reactivating effect with participation of extracellular peptides. The highest protective activity was found in peptide reactivation factors (RFs) of bakery yeast-Saccharomyces cerevisiae, Kluyveromyces fragilis, and Candida utilis; the highest reactivating activity was exhibited by factors of the above-mentioned cultures and Debariomyces hansenii. Cross-protective and reactivating effects of RFs of yeast belonging to different taxonomic groups were demonstrated. Cross-protection increased two to three times after preexposure of reactivation factors to UV light (activation) in contrast to their reactivating effect.

Effects of temperature, storage period and the number of individuals on the detection of the false spider mite Cardinium endosymbiont.

Cardinium have been found as endosymbionts of Brevipalpus phoenicis, the mite vector of the Citrus leprosis virus. With the long-term objective being to understand the mechanisms of plant-virus-vector interactions, we evaluated the different storage conditions and periods, as well as the number of mites needed for PCR-amplification of such endosymbionts, making it possible to collect mites in different geographical regions without prolonged storage compromising subsequent analyses.

The "domino theory" of gene death: gradual and mass gene extinction events in three lineages of obligate symbiotic bacterial pathogens.

During the adaptation of an organism to a parasitic lifestyle, various gene functions may be rendered superfluous due to the fact that the host may supply these needs. As a consequence, obligate symbiotic bacterial pathogens tend to undergo reductive genomic evolution through gene death (nonfunctionalization or pseudogenization) and deletion. Here, we examine the evolutionary sequence of gene-death events during the process of genome miniaturization in three bacterial species that have experienced extensive genome reduction: Mycobacterium leprae, Shigella flexneri, and Salmonella typhi. We infer that in all three lineages, the distribution of functional categories is similar in pseudogenes and genes but different from that of absent genes. Based on an analysis of evolutionary distances, we propose a two-step "domino effect" model for reductive genome evolution. The process starts with a gradual gene-by-gene-death sequence of events. Eventually, a crucial gene within a complex pathway or network is rendered nonfunctional triggering a "mass gene extinction" of the dependent genes. In contrast to published reports according to which genes belonging to certain functional categories are prone to nonfunctionalization more frequently and earlier than genes belonging to other functional categories, we could discern no characteristic regularity in the temporal order of function loss.

A symbiotic concept of autoimmunity and tumour immunity: lessons from vitiligo.

Vitiligo is a skin disease in which melanocytes (MCs) are eradicated from lesional epidermis, resulting in disfiguring loss of pigment. MCs are destroyed by MC-reactive T cells, as well as other non-immune and immune components. Similarities exist between the autoimmunity observed in vitiligo and the tumour immunity observed in melanoma immuno-surveillance. An analysis of these mechanisms might lead to the development of new therapies for both vitiligo and melanoma.